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Tree rearrangement
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#	Item
1	FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin Presented by Arjun P. Athreya April 21, 2015 CS 598AGB Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-04-19 19:41:13 Phylogenetics Tree rearrangement Neighbor joining B-tree Tree T-tree Maximum likelihood estimation
2	PSODA: Better Tasting and Less Filling Than PAUP Hyrum Carroll Mark Ebbert Mark Clement and Quinn Snell Add to Reading List Source URL: www.biotconf.org Language: English - Date: 2014-05-21 17:42:43 Bioinformatics Genetics Maximum parsimony PHYLIP Tree rearrangement PAUP Phylogenetic tree Phylo Nexus file Computational phylogenetics Science Phylogenetics
3	Kinodynamic Randomized Rearrangement Planning via Dynamic Transitions Between Statically Stable States Joshua A. Haustein∗ , Jennifer King† , Siddhartha S. Srinivasa† , Tamim Asfour∗ ∗ Karlsruhe Institute of Te Add to Reading List Source URL: www.ri.cmu.edu Language: English - Date: 2015-05-11 12:59:51 Motion planning Theoretical computer science Tmax Rapidly-exploring random tree Robot Kinematics Reactive planning Planner Library Robotics Artificial intelligence Automated planning and scheduling
4	Nonprehensile Whole Arm Rearrangement Planning on Physics Manifolds Jennifer E. King⇤ , Joshua A. Haustein† , Siddhartha S. Srinivasa⇤ , Tamim Asfour† ⇤ Carnegie Mellon University (CMU), † Karlsruhe Institute Add to Reading List Source URL: www.ri.cmu.edu Language: English - Date: 2015-05-11 13:02:41 Motion planning Theoretical computer science Probabilistic roadmap Rapidly-exploring random tree Planner Robot Collision detection Causality Robotics Robot control Artificial intelligence
5	Chapter 8 Worked examples This chapter provides a series of worked examples illustrating the various tree comparison, consensus, randomisation, and mapping features available in COMPONENT. Where possible the examples hav Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:38:40 Binary trees Data structures Tree rearrangement Tree B-tree Phylogenetic tree Unrooted binary tree R-tree T-tree Graph theory Phylogenetics Data management
6	MOLECULAR PHYLOGENETICS AND EVOLUTION Vol. 7, No. 2, APRIL, pp. 231–240, 1997 ARTICLE NO. FY960390 From Gene to Organismal Phylogeny: Reconciled Trees and the Gene Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:40:48 Phylogenetic tree Homology Gene duplication Horizontal gene transfer Tree rearrangement Genetics Evolution Tree Biology Phylogenetics Maximum parsimony
7	Computing Distances Between Evolutionary Trees Catherine McCartin Massey University, New Zealand and Magnus Bordewich, Michael Hallett, Charles Semple Add to Reading List Source URL: fpt.wdfiles.com Language: English - Date: 2012-09-17 05:11:30 Tree Science Mathematics Biology Unrooted binary tree Tree rearrangement Phylogenetics Computational phylogenetics Phylogenetic tree
8	Chapter 5 Comparing trees This chapter describes the tree comparison measures available in COMPONENT, and the various ways you can compare trees using the program. Among the possible uses of tree comparison measures are: Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:38:38 Tree rearrangement Unrooted binary tree Binary tree Tree R-tree B-tree Phylogenetic tree T-carrier Skew heap Graph theory Phylogenetics Data management
9	Notung: Dating Gene Duplications using Gene Family Trees y Kevin Chen, Dannie Durand Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:39:56 Gene duplication Binary tree Tree rearrangement Homology Tree Newick format Polymorphism Phylogenetics Biology Phylogenetic tree
10	DIMACS Series in Discrete Mathematics and Theoretical Computer Science Volume 00, 19xx Reconciled trees and incongruent gene and species trees Roderic D. M. Page and Michael A. Charleston Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:40:30 Data management Data structures Phylogenetics Tree rearrangement R-tree B-tree Tree traversal T-tree Search tree Graph theory Binary trees Computing

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